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BTU  › Pro veřejnost  › Publikace

Publikace

Analytika ASEP

 

 

Vybrané publikace ústavu

 

2017

Rohlenova, K., Sachaphibulkij, K., Stursa, J., Bezawork-Geleta, A., Blecha, J., Endaya, B., Werner, L., Cerny, J., Zobalova, R., Goodwin, J., Spacek, T., Alisadeh, E., Yan, B., Nguyen, M., Vondrusova, M., Sobol, M., Jezek, P., Hozak, P., Truksa, J., Rohlena, J., Dong, L., Neuzil, J. Selective disruption of respiratory supercomplexes as a new strategy to suppress Her2-high breast cancer. Antioxidants & Redox Signaling, 26(2): 84-103, 2017. doi: 10.1089/ars.2016.6677. ISSN 1557-7716.

 

 

2016

Frolikova, M., Sebkova, N., Ded, L., Dvorakova-Hortova, K. Characterization of CD46 and β1 integrin dynamics during sperm acrosome reaction. Scientific Reports, 6: 33714, 2016. doi: 10.1038/srep33714. eISSN 2045-2322.

 

Novakova, Z., Wozniak, K., Jancarik, A., Rais, R., Wu, Y., Pavlicek, J., Ferraris, D., Havlinova, B., Ptacek, J., Vavra, J., Hin, N., Rojas, C., Majer, P., Slusher, B. S., Tsukamoto, T., Barinka, C. Unprecedented Binding Mode of Hydroxamate-Based Inhibitors of Glutamate Carboxypeptidase II: Structural Characterization and Biological Activity. Journal of Medicinal Chemistry, 59(10): 4539-4550, 2016. doi: 10.1021/acs.jmedchem.5b01806. ISSN 0022-2623.

 

Dvorakova, M., Jahan, I., Macova, I., Chumak, T., Bohuslavova, R., Syka, J., Fritzsch, B., Pavlinkova, G. Incomplete and delayed Sox2 deletion defines residual ear neurosensory development and maintenance. Scientific Reports, 6: 38253, 2016. doi: 10.1038/srep38253. ISSN 2045-2322.

 

Chumak, T., Bohuslavova, R., Macova, I., Dodd, N., Buckiova, D., Fritzsch, B., Syka, J., Pavlinkova, G. Deterioration of the Medial Olivocochlear Efferent System Accelerates Age-Related Hearing Loss in Pax2-Isl1 Transgenic Mice. Molecular Neurobiology, 53(4): 2368-2383, 2016. doi: 10.1007/s12035-015-9215-1. ISSN 0893-7648.

 

2015

Tan, A. S., Baty, J. W., Dong, L., Bezawork-Geleta, A., Endaya, B., Goodwin, J., Bajzikova, M., Kovarova, J., Peterka, M., Yan, B., Pesdar, E. A., Sobol, M., Filimonenko, A., Stuart, S., Vondrusova, M., Kluckova, K., Sachaphibulkij, K., Rohlena, J., Hozak, P., Truksa, J., Eccles, D., Haupt, L. M., Griffiths, L. R., Neuzil, J., Berridge, M. V. Mitochondrial genome acquisition restores respiratory function and tumorigenic potential of cancer cells without mitochondrial DNA. Cell Metabolism, 21(1): 81-94, 2015. doi: 10.1016/j.cmet.2014.12.003. ISSN 1550-4131.

 

Skalova, T., Blaha, J., Harlos, K., Duskova, J., Koval, T., Stransky, J., Hasek, J., Vanek, O., Dohnalek, J. Four crystal structures of human LLT1, a ligand for human NKR-P1, in varied glycosylation and oligomerization state. Acta Crystallographica D: Biological Crystallography, 71(Pt 3): 578-591, 2015. doi: 10.1107/S1399004714027928. eISSN 1399-0047.

 

Brieno-Enriquez, M. A., Garcia-Lopez, J., Cardenas, D. B., Guibert, S., Cleroux, E., Ded, L., de Dios Hourcade, J., Peknicova, J., Weber, M., del Mazo, J. Exposure to Endocrine Disruptor Induces Transgenerational Epigenetic Deregulation on MicroRNAs in Primordial Germ Cells. PLoS ONE, 10(4): e0124296, 2015. doi: 10.1371/journal.pone.0124296. ISSN 1932-6203.

 

Cerny, J., Biedermannova, L., Mikulecky, P., Zahradnik, J., Charnavets, T., Sebo, P., Schneider, B. Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction. Interferon-γ receptor 1 as a model. BioMed Research International, ID 716945, 2015. doi: 10.1155/2015/716945. eISSN 2314-6141.

 

Sidova, M., Sindelka, R., Castoldi, M., Benes, V., Kubista, M. Intracellular microRNA profiles form in the Xenopus laevis oocyte that may contribute to asymmetric cell division. Scientific Reports, 5: 11157, 2015. doi: 10.1038/srep11157. eISSN 2045-2322.

 

Mareckova, L., Petrokova, H., Osicka, R., Kuchar, M., Maly, P. Novel binders derived from an albumin binding domain scaffold targeting human prostate secretory protein 94 (PSP94). Protein & Cell, 6(10): 774-779, 2015. doi: 10.1007/s13238-015-0194-9.ISSN 1674-8018.

 

Truksa, J., Dong, L., Rohlena, J., Stursa, J., Vondrusova, M., Goodwin, J., Nguyen, M., Kluckova, K., Rychtarcikova, Z., Lettlova, S., Spacilova, J., Stapelberg, M., Zoratti, M., Neuzil, J. Mitochondrially targeted vitamin E succinate modulates expression of mitochondrial DNA transcripts and mitochondrial biogenesis. Antioxidants & Redox Signaling, 22(11): 883-900, 2015. doi: 10.1089/ars.2013.5594. ISSN 1523-0864.

 

Margaryan, H., Dorosh, A., Capkova, J., Manaskova-Postlerova, P., Philimonenko, A., Hozak, P., Peknicova, J. Characterization and possible function of glyceraldehyde-3-phosphate dehydrogenase-spermatogenic protein GAPDHS in mammalian sperm. Reproductive Biology and Endrocrinology, 13(1): 15, 2015. doi: 10.1186/s12958-015-0008-1. ISSN 1477-7827.

 

2014

Schneider, B., Cerny, J., Svozil, D., Cech, P., Gelly, J.-Ch., de Brevern, A. G. Bioinformatic analysis of the protein/DNA interface. Nucleic Acids Research, 42(5): 3381-3394, 2014. doi: 10.1093/nar/gkt1273. ISSN 0305-1048.

 

Zatecka, E., Ded, L., Elzeinova, F., Kubatova, A., Dorosh, A., Margaryan, H., Dostalova, P., Korenkova, V., Hoskova, K., Peknicova, J. Effect of zearalenone on reproductive parameters and expression of selected testicular genes in mice. Reproductive toxicology, 45: 20-30, 2014. doi:10.1016/j.reprotox.2014.01.003. ISSN 1873-1708.

 

Stapelberg, M., Zobalova, R., Nguyen, M. N., Walker, T., Stantic, M., Goodwin, J., Pasdar, E. A., Thai, T., Prokopova, K., Yan, B., Hall, S., de Pennington, N., Thomas, S. R., Grant, G., Stursa, J., Bajzikova, M., Meedeniya, A. C., Truksa, J., Ralph, S. J., Ansorge, O., Dong, L. F., Neuzil, J. Indoleamine-2,3-dioxygenase elevated in tumor-initiating cells is suppressed by mitocans. Free Radical Biology and Medicine, 67: 41-50, 2014. doi: 10.1016/j.freeradbiomed.2013.10.003. ISSN 0891-5849.

 

Pavlicek, J., Ptacek, J., Cerny, J., Byun, Y., Skultetyova, L., Pomper, M. G., Lubkowski, J., Barinka, C. Structural characterization of P1'-diversified urea-based inhibitors of glutamate carboxypeptidase-II. Bioorganic & Medicinal Chemistry Letters, 24(10): 2340-2345, 2014. doi: 10.1016/j.bmcl.2014.03.066. ISSN 0960-894X.

 

2013

Bohuslavova, R., Skvorova, L., Sedmera, D., Semenza, G. L., Pavlinkova, G. Increased susceptibility of HIF-1α heterozygous-null mice to cardiovascular malformations associated with maternal diabetes. Journal of Molecular and Cellular Cardiology, 60C:129-141, 2013. ISSN 0022-2828.

 

Zatecka, E., Ded, L., Elzeinova, F., Kubatova, A., Dorosh, A., Margaryan, H., Dostalova, P., Peknicova, J. Effect of tetrabrombisphenol A on induction of apoptosis in the testes and changes in expression of selected testicular genes in CD1 mice. Reproductive Toxicology, 35: 32-39, 2013. ISSN 0890-6238.

 

Elzeinova, F., Peknicova, J., Ded, L., Dorosh, A., Kubatova, A., Margaryan, H., Makovicky, P., Rajmon, R. Adverse effect of tetracycline and doxycycline on testicular tissue and sperm parameters in CD1 outbred mice. Experimental and Toxicologic Pathology,65(6): 911-917, 2013. ISSN 0940-2993.

 

2012

Bar, T., Kubista, M., Tichopad, A. Validation of kinetics similarity in qPCR. Nucleic Acids Research, 40: 1395-1406, 2012. ISSN 0305-1048. 

 

Dong, L. F., Grant, G., Massa, H., Zobalova, R., Akporiaye, E., Neuzil, J. Alpha-Tocopheryloxyacetic acid is superior to alpha-tocopheryl succinate in suppressing HER2-high breast carcinomas due to its higher stability. International Journal of Cancer, 131: 1052-1058, 2012. ISSN 0020-7136.

 

Pavlicek, J., Ptacek, J., Barinka, C. Glutamate Carboxypeptidase II: An Overview of Structural Studies and Their Importance for Structure-Based Drug Design and Deciphering the Reaction Mechanism of the Enzyme. Current Medical Chemistry, 19: 1300-1309, 2012. ISSN 0929-8673.

 

Yi, Y. J., Zimmermann, S. W., Manandhar, G., Odhiambo, J. F., Kennedy, C., Jonakova, V., Manaskova-Postlerova, P., Sutovsky, M., Park, Ch. S., Sutovsky, P. Ubiquitin-activating enzyme (UBA1) is required for sperm capacitation, acrosomal exocytosis and sperm-egg coat penetration during porcine fertilization. International Journal of Andrology, 35: 196-210, 2012. ISSN 0105-6263.

 

Ahmad, J. N., Li, J., Biedermannova, L., Kuchar, M., Sipova, H., Semeradtova, A., Cerny, J., Petrokova, H., Mikulecky, P., Polinek, J., Stanek, O., Vondrasek, J., Homola, J., Maly, J., Osicka, R., Sebo, P., Maly, P. Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G. Proteins: structure, function and bioinformatics, 80: 774-789, 2012. ISSN 0887-3585.

 

Sebkova, N., Cerna, M., Ded, L., Peknicova, J., Dvorakova-Hortova, K. The slower the better: how sperm capacitation and acrosome reaction is modified in the presence of estrogen. Reproduction, 143: 297-307, 2012. ISSN 1470-1626.

 

2011

Rohlena, J., Dong, L. F., Kluckova, K., Zobalova, R., Goodwin, J., Tilly, D., Stursa, J., Pecinova, A., Philimonenko, A., Hozak, P., Banerjee, J., Ledvina, M., Sen, Ch. K., Houstek, J., Coster, M. J., Neuzil, J. Mitochondrially targeted alpha-tocopheryl succinate is antiangiogenic: potential benefit against tumor angiogenesis but caution against wound healing. Antioxidants & Redox Signaling, 15: 2923-2935, 2011. ISSN 1523-0864.

 

Valis, K., Prochazka, L., Boura, E., Chladova, J., Obsil, T., Rohlena, J., Truksa, J., Dong, L. F., Ralph, J., Neuzil, J. Hippo/Mst1 stimulates transcription of the proapoptotic mediator NOXA in a FoxO1-dependent manner. Cancer Research, 71: 946-954, 2011. ISSN 0008-5472.

 

Zobalova, R., Prokopova, K., Stantic, M., Stapelberg, M., Dong, L. F., Ralph, J., Akporiaye, E., Neuzil, J. The potential role of CD133 in immune surveillance and apoptosis: a mitochondrial connection? Antioxidants & Redox Signaling, 15: 2989-3002, 2011. ISSN 1523-0864.

 

Plechanovova, A., Byun, Y., Alquicer, G., Skultetyova, L., Mlcochova, P., Nemcova, A., Kim, H.-J., Navratil, M., Mease, R., Lubkowski, J., Pomper, M., Konvalinka, J., Rulisek, L., Barinka, C. Novel Substrate-Based Inhibitors of Human Glutamate Carboxypeptidase II with Enhanced Lipophilicity. Journal of Medicinal Chemistry, 54: 7535-7546, 2011. ISSN 0022-2623.

 

Salbaum, J. M., Kruger, C., Zhang, X., Delahaye, N. A., Pavlinkova, G., Burk, D. H., Kappen, C. Altered gene expression and spongiotrophoblast differentiation in placenta from a mouse model of diabetes in pregnancy. Diabetologia, 54: 1909-1920, 2011. ISSN 0012-186X.

 

Neuzil, J., Cerny, J., Dyason, J. C., Dong, L. F., Ralph, J. Affinity of vitamin E analogues for the ubiquinone complex II site correlates with their toxicity to cancer cells. Molecular Nutrition & Food Research, 55: 1543-1551, 2011. ISSN 1613-4125.

 

Dong, L. F., Jameson, V. J. A., Tilly, D., Prochazka, L., Rohlena, J., Valis, K., Truksa, J., Zobalova, R., Mahdavian, E., Kluckova, K., Stantic, M., Stursa, J., Freeman, R., Witting, P. K., Norberg, E., Goodwin, J., Salvatore, B. A., Novotna, J., Turanek, J., Ledvina, M., Hozak, P., Zhivotovsky, B., Coster, M., Ralph, J., Smith, R. A. J., Neuzil, J. Mitochondrial targeting of alpha-tocopheryl succinate enhances its pro-apoptotic efficacy: A new paradigm for effective cancer therapy. Free Radical Biology and Medicine, 50: 1546-1555, 2011. ISSN 0891-5849.,

 

2010

Kolostova, K., Pinterova, D., Tesarova, P., Bobek, V., Mikulova, V., Kubecova, M., Brychta, M., Rusnakova, V., Bauer, S. K., Kubista, M. Gene expression profiling in circulation cells (CTCS) of breast carcinoma patients. Annals of Oncology, 21(4): 49-50, 2010.

 

Cerny, J., Hobza, P. Energy barriers between H-bonded and stacked structures of 9-methyladenine...1-methylthymine and 9-methylguanine...1-methylcytosine complexes. Chemical Communications, 46(3): 383-385, 2010. doi: 10.1039/b913209k. ISSN 1359-7345.

 

Ded, L., Dostalova, P., Dorosh, A., Dvorakova-Hortova, K., Peknicova, J. Effect of estrogens on boar sperm capacitation in vitro. Reproductive Biology and Endocrinology, 8:87, 2010. doi: 10.1186/1477-7827-8-87. ISSN 1477-7827.

 

Bohuslavova, R., Kolar, F., Kuthanova, L., Neckar, J., Tichopad, A., Pavlinkova, G. Gene expression profiling of sex differences in HIF1-dependent adaptive cardiac responses to chronic hypoxia. Journal of Applied Physiology, 109(4):1195-1202, 2010. ISSN 8750-7587.

 

Kozubenko, N., Turnovcova, K., Kapcalova, M., Butenko, O., Anderova, M., Rusnakova, V., Kubista, M., Hampl, A., Jendelova, P., Sykova, E. Analysis of In Vitro and In Vivo Characteristics of Human Embryonic Stem Cell-Derived Neural Precursor. Cell Transplantation, 19: 471-486, 2010. ISSN 0963-6897.

 

Zhang, A. X., Murelli, R. P., Barinka, C., Michel, J., Cocleaza, A., Jorgensen, W. L., Lubkowski, J., Spiegel, D. A. A remote arene-binding site on prostate specific membrane antigen revealed by antibody-recruiting small molecule. Journal of the American Chemical Society, 132: 12711-12716, 2010. doi: 10.1021/ja104591m. ISSN 0002-7863.

 

Ralph, J., Rodriguez-Enriquez, S., Neuzil, J., Moreno-Sanchez, R. Bioenergetic pathways in tumor mitochondria as targets for cancer therapy and the importance of the ROS-induced apoptotic trigger. Molecular Aspects of Medicine, 31: 29-59, 2010. ISSN 0098-2997.

 

Tomasetti, M., Strafella, E., Staffolani, S., Santarelli, L., Neuzil, J., Guerrieri, R. Alpha-Tocopheryl succinate promotes selective cell death induced by vitamin K3 in combination with ascorbate. British Journal of Cancer, 102: 1224-1234, 2010. ISSN 0007-0920.

 

2009

Dong, L. F., Freeman, R., Liu, J., Zobalova, R., Marin-Hernandez, A., Stantic, M., Rohlena, J., Valis, K., Rodriguez-Enriquez, S., Butcher, B., Goodwin, J., Brunk, U. T., Witting, P. K., Moreno-Sanchez, R., Scheffler, I. E., Ralph, J., Neuzil, J. Suppression of tumor growth in vivo by the mitocan alpha-tocopheryl succinate requires respiratory complex II. Clinical Cancer Research, 15: 1593-1600, 2009. ISSN 1078-0432.

 

Bustin, A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl , M. V., Shipley, G. L., Vandesompele, J., Wittver, C. T. The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR. Experiment Clinical Chemistry, 55: 611-622, 2009. ISSN 0009-9147.

 

Tichopad, A., Kitchen, R., Riedmaier, I., Becker, Ch., Ståhlberg, A., Kubista, M. Design and Optimization of Reverse-Transcription Quantitative PCR. Experiment Clinical Chemistry, 55:1816-1823, 2009. ISSN 0009-9147.

 

Cerny, J., Vondrasek, J., Hobza, P. Loss of dispersion energy changes the stability and folding/unfolding equilibrium of the Trp-cage protein. Journal of Physical Chemistry B, 113(16): 5657-5660, 2009. doi: 10.1021/jp9004746. ISSN 1520-6106.

 

Davidova, N., Jonakova, V., Manaskova-Postlerova, P. Expression and localization of acrosin inhibitor in boar reproductive tract. Cell and Tissue Research, 338: 303-311, 2009. ISSN 0302-766X.

 

Pavlinkova, G., Salbaum, M., Kappen, C. Maternal diabetes alters transcriptional programs in the developing embryo. B M C Genomics, 10: 1-12, 2009. ISSN 1471-2164.